Choi, Hyun-Il, Jun-Pyo Choi, Jiwon Seo, Beom Jin Kim, Mina Rho, Jin Kwan Han, and Jae Gyu Kim. "Helicobacter pylori-derived extracellular vesicles increased in the gastric juices of gastric adenocarcinoma patients and induced inflammation mainly via specific targeting of gastric epithelial cells." Experimental & molecular medicine 49, no. 5 (2017): e330. [DOI:10.1038/emm.2017.47]

Song, Hae Jung, JunMo Lee, Louis Graf, Mina Rho, Huan Qiu, Debashish Bhattacharya, and Hwan Su Yoon. "A novice’s guide to analyzing NGS-derived organelle and metagenome data." Algae 31, no. 2 (2016): 137-154. [DOI:10.4490/algae.2016.31.6.5]

Lee, Hyungro, Minsu Lee, Wazim Mohammed Ismail, Mina Rho, Geoffrey C. Fox, Sangyoon Oh, and Haixu Tang. "MGEScan: a Galaxy-based system for identifying retrotransposons in genomes." Bioinformatics 32, no. 16 (2016): 2502-2504.[DOI;10.1093/bioinformatics/btw157]

Lim, Mi Young, Hyo Shin Yoon, Mina Rho, Joohon Sung, Yun-Mi Song, Kayoung Lee, and GwangPyo Ko. "Analysis of the association between host genetics, smoking, and sputum microbiota in healthy humans." Scientific reports 6 (2016): 23745. [DOI:10.1038/srep23745]

Magner, William J., Bianca Weinstock-Guttman, Mina Rho, David Hojnacki, Rabia Ghazi, Murali Ramanathan, and Thomas B. Tomasi. "Dicer and microRNA expression in multiple sclerosis and response to interferon therapy." Journal of neuroimmunology 292 (2016): 68-78. [DOI:10.1016/j.jneuroim.2016.01.009]

Yoo, Jae Young, Mina Rho, Young-Ah You, Eun Jin Kwon, Min-Hye Kim, Sungmin Kym, Young-Koo Jee, Yoon-Keun Kim, and Young Ju Kim. "16S rRNA gene-based metagenomic analysis reveals differences in bacteria-derived extracellular vesicles in the urine of pregnant and non-pregnant women." Experimental & molecular medicine 48, no. 2 (2016): e208. [DOI:10.1038/emm.2015.110]

Lim, Mi Young, et al. "Stability of gut enterotypes in Korean monozygotic twins and their association with biomarkers and diet." Scientific reports 4 (2014): 7348. [DOI:10.1038/srep07348]

Kim, Yihwan, InSong Koh, and Mina Rho. "Deciphering the human microbiome using next-generation sequencing data and bioinformatics approaches." Methods 79 (2015): 52-59. [DOI:10.1016/j.ymeth.2014.10.022]

C. Kwon, H. Tak, M. Rho, H. R. Chang, Y. H. Kim, K. T. Kim, C. Balch, E. K. Lee, and S. Nam (2014), "Detection of PIWI and piRNAs in the mitochondria of mammalian cancer cells", Biochem Biophy Res Commun 28:446 

Q. Zhang, M. Rho, H. Tang, T. G. Doak, and Y. Ye (2013), “CRISPR-Cas systems target a diverse collection of invasive mobile genetic elements in human microbiomes”, Genome Biol. 14:R40 [DOI:10.1186/gb-2013-14-4-r40]

Y. Wu, M. Rho, T. G. Doak, and Y. Ye (2012), “Stitching gene fragments with a network matching algorithm improves gene assembly for metagenomics”, Bioinformatics, 28:i363-i369.[DOI:10.1093/bioinformatics/bts388]

M. Rho, Y. Wu, H. Tang, T. G. Doak, and Y. Ye (2012), “Diverse CRISPRs evolving in human microbiomes”, PLoS Genet., 8:e1002441. [DOI:/10.1371/journal.pgen.1002441]

The Human Microbiome Project Consortium (2012), ``A framework for human microbiome research", Nature, 486:215-221. [DOI:/10.1038/nature11209]

The Human Microbiome Project Consortium (2012), "Structure, function and diversity of the healthy human microbiome" Nature, 486:207-214. [DOI:/10.1038/nature11234]

Y. Wu, M. Rho, T. G. Doak, and Y. Ye (2012), “Oral spirochetes implicated in dental diseases are widespread in normal human subjects and carry extremely diverse integron gene cassettes”, Appl. Environ. Microbiol. 78:5288-5296. [DOI:/10.1128/AEM.00564-12]

A. Hughes, Y. Ruan, S. Ekanayake, S.-H. Bae, Q. Dong, M. Rho, J. Qiu, and G. Fox (2012), "Interpolative multidimensional scaling techniques for the identification of clusters in very large sequence sets", BMC Bioinformatics, 13 (Suppl 2) : S9. 

M. Lynch, L. M. Bobay, F. Catania, J. F. Gout, and M. Rho (2011), "The Repatterning of Eukaryotic Genomes by Random Genetic Drift", Annu. Rev. Genomics Hum. Genet. 12:347-366. [DOI:10.1146/annurev-genom-082410-101412]

J. K. Colbourne et al. (2011), "The Ecoresponsive Genome of Daphnia pulex", Science, 331:555-561. [DOI:10.1126/science.1197761]

M. Rho, H. Tang, and Y. Ye (2010), "FragGeneScan: predicting genes in short and error-prone reads", Nucleic Acids Res. 38:e191. [DOI:10.1093/nar/gkq747]

M. Rho, S. Schaack, X. Gao, S. Kim, M. Lynch, and H. Tang (2010), "LTR retroelements in the genome of Daphnia pulex", BMC Genomics, 11:425. [DOI:10.1186/1471-2164-11-425]