Presentations and Invited talks

  • "Community and Immunity: Trafficking of Genetic Materials in Human Microbiome", Department of Microbiology and Immunology, University at Buffalo, SUNY (Dec 5, 2012).
  • "Chasing Mobile Genetic Elements: Bioinformatics of Next-Generation Sequencing Data", Department of Bolecular and Cellular Biology, Roswell Park Cancer Institute, Buffalo, NY (Nov 1, 2012).
  • "DACIDR: deterministic annealed clustering with interpolative dimension reduction using a large collection of 16S rRNA sequences", ACM Conference on Bioinformatics, Computational Biology and Biomedicine (ACM BCB), Orlando, FL (Oct 7–10, 2012).
  • “Metagenomic Analysis Using Next-Generation Sequencing Data”, Seoul National University Bioinformatics Workshop 2012, Seoul, Korea (Jun 21–23, 2012)
  • “CRISPRs: Evolving immune systems in human microbiomes”, International Human Microbiome Congress 2012, Paris, France (Mar 19–21, 2012).
  • “Computational Approaches to Identify Genetic Elements from Next-Generation Sequencing Data”, Department of Pathology, Roswell Park Cancer Institute, Buffalo, NY (Dec 6, 2011).
  • “iAssembler: Iterative Metagenome Assembly Guided by Ab Initio Prediction of Gene Fragments”, International Human Microbiome Congress 2011, Vancouver, Canada (Mar 9–11, 2011).
  • “Fragment Assembly and Metabolic/Species Diversity Analysis for HMP”, Human Microbiome Research Conference 2010, St. Louis, MO (Aug 31–Sep 2, 2010).
  • “FragGeneScan: Predicting Genes in Short and Error-prone Reads”, ISMB 2010, Boston, MA (Jul 11–13, 2010).
  • “LTR-Retrotransposon Content of 110 Eukaryotic Genomes”, SMBE 2010, Lyon, France (Jul 4–8, 2010).
  • “MGEScan: Identifying Mobile Genetic Elements in Eukaryotic Genomes”, Department of Biology, University of Texas, Arlington, TX (Apr 16, 2010).
  • “FragGeneScan: Predicting Genes in Metagenomics”, Center for Genomics and Bioinformatics, Indiana University, Bloomington, IN (Feb 4, 2010).
  • “Novel insights into the number, genome coverage, and age distributions of LTR retrotransposons in eukaryotic genomes”, SMBE 2009, Iowa City, IA (Jun 3–7, 2009).
  • “Automatic identification of non-LTR retrotransposons in genomic sequences”, 2nd International Conference/Workshop on Genomic Impact of Eukaryotic Transposable Elements, Asilomar, CA (Feb 6–10, 2009).
  • “Retrotransposons in the Genome of Daphnia pulex”, ISMB 2008, Toronto, Canada (Jul 19–23, 2008).
  • “De Novo Identification of LTR Retrotransposon in Eukaryote Genome”, Annual Indiana Bioinformatics Conference, Center for Computational Biology and Bioinformatics, Indianapolis, IN (May 19, 2006).
  • “De Novo Identification of LTR Retrotransposon in Eukaryote Genome”, Center for Genomics and Bioinformatics, Indiana University, Bloomington, IN (Nov 9, 2006).
  • “State-based Mutation Test Criterion for Class Test”, Korean Information Science Society Meeting, Korea (Apr, 1998).
  • “Test Process in the Object-Oriented Software Development Life Cycle Based on the Test Standards”, Asia-Pacific Workshop on Software Process Improvement, Hong Kong (Dec, 1997).
  • “Object-Oriented Software Test Process Based on Standards”, Korean Information Science Society Meeting, Korea (Oct, 1997).